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Securities & Investments

Agency Mortgage-Backed Securities

Also known as Agency MBS

Agency MBS are mortgage-backed securities guaranteed by Fannie Mae, Freddie Mac, or Ginnie Mae. They carry minimal credit risk (US government or GSE backing) but full interest-rate and prepayment risk.

Formula

Agency MBS = Pass-throughs + CMOs + Stripped MBS issued by Fannie/Freddie/Ginnie

Banks report Agency MBS holdings on Schedule RC-B in three subcategories: GNMA pass-throughs (full US government guarantee), FNMA/FHLMC pass-throughs (GSE guarantee, market-implied government backing post-2008 conservatorship), and CMOs / stripped MBS issued or guaranteed by the same entities.

Why it matters

Agency MBS is the single largest holding in most US bank securities portfolios — the market exceeds $9T outstanding. Zero credit risk and 20% Basel risk weight make agency MBS the default reach-for-yield trade above cash. The same securities drove the AOCI losses that helped sink SVB in 2023 because their duration was longer than banks modeled.

How to interpret

Agency MBS / Securities Portfolio above 60% signals heavy duration concentration. Above 80% (rare) indicates a securities book run as a rate-spread trade. The right comparison is not absolute share but unrealized loss/gain — agency MBS shares of 70% are fine if portfolio duration is short.

Thresholds

RangeLabelInterpretation
< 30%LightDiversified portfolio across security types.
30–60%TypicalStandard US bank securities composition.
60–80%HeavyHigh prepayment & duration concentration.
> 80%ConcentratedSecurities book operates as a rate-spread trade.

Worked example

A $5B community bank reports $800M of agency MBS against a $1.0B total securities portfolio — 80% agency MBS concentration. If duration is 5 years and rates rose 100bps year over year, the portfolio would show roughly $40M of mark-to-market decline; the AOCI burden depends on how much flows through capital.

Frequently asked

Are agency MBS truly credit-risk-free?

Practically yes. GNMA carries full faith and credit of the US government. FNMA and FHLMC are in federal conservatorship since 2008; market pricing treats their guarantees as government-backed even though the legal backstop is implicit.

Why is prepayment risk material on agency MBS?

When mortgage rates fall, borrowers refinance, returning principal to investors who must reinvest at lower yields. When rates rise, prepayments slow and the bank holds longer-than-modeled assets when the bank needs duration to be short. Both directions are bank-unfriendly.

How did agency MBS contribute to the 2023 bank failures?

Many small and regional banks loaded up on long-dated agency MBS during 2020-2021 at sub-2% yields. When rates rose to 5%+, mark-to-market losses ranged from 15% to 25% of the portfolio. SVB, First Republic, and Signature each had material agency MBS exposure that contributed to depositor panic when partial portfolios had to be sold at a loss.

Direction: Lower is betterUnits: $Call report: Schedule RC-BBrowse banks

Sources

  • FFIEC Call Report Schedule RC-B (Securities)
  • SIFMA US Mortgage-Backed Securities Statistics

See Agency MBS across 4,335 US banks

BankRegReports ranks every FDIC-insured institution by Agency MBS, refreshed quarterly within 48 hours of FFIEC release.